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ZIRC
ZFIN ID: ZDB-GENE-030131-274
Gene Name: PRP40 pre-mRNA processing factor 40 homolog A
Gene Symbol: prpf40a
Sequence Ontology ID : SO:0000704

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Previous Names: fb18h07, fe47a12, fnbp3 (1), wu:fb18h07, wu:fe47a12

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(Including Attributions)
Location: Chr: 9 Mapping Details/Browsers
Nomenclature History
AUTOMATED DESCRIPTION
Predicted to have RNA binding activity; predicted to be involved in mRNA splicing, via spliceosome; predicted to localize to the U1 snRNP and U2-type prespliceosome; orthologous to several human  ...
GENE EXPRESSION
Directly Submitted Expression Data: 1 figure (1 image) from Thisse et al., 2004 [MGC:56384]
Wild-type Stages, Structures: Zygote:1-cell (0.0h-0.75h) to Hatching:Pec-fin (60.0h-72.0h)
 
Curated Microarray Expression: GEO (1)
PHENOTYPE No data available
DISEASE ASSOCIATED WITH prpf40a HUMAN ORTHOLOG No data available
DISEASE ASSOCIATED WITH prpf40a VIA EXPERIMENTAL MODELS No data available
GENE ONTOLOGY
Ontology GO Term
Biological Process mRNA cis splicing, via spliceosome (more)
Cellular Component U1 snRNP (more)
Molecular Function RNA binding (more)
GO Terms (all 5)
TRANSCRIPTS
Type Name Length (bp) Analysis
mRNA prpf40a-201 (1) 3285
GENE PRODUCT DESCRIPTION No description available
INTERACTIONS AND PATHWAYS
ANTIBODIESNo data available
PLASMIDSNo data available
CONSTRUCTS WITH SEQUENCES FROM prpf40a No data available
MARKER RELATIONSHIPS
prpf40aContained in: [BAC] CH211-279A7 (1) (order this)
prpf40aEncodes: [EST] fb18h07
[cDNA] MGC:56384 (1) (order this)
SEQUENCE INFORMATION
Type Accession # Length (bp/aa) Analysis
RNA RefSeq:NM_198356 (1) 3281bp
Genomic GenBank:CR925815 (1) 178160bp
Select Tool
Polypeptide UniProtKB:Q7ZUE4 (1) 851aa
Sequence Clusters UniGene:76804 (1)
Sequence Information (all 13)
ORTHOLOGY for prpf40a (Chr: 9)
CITATIONS (22)