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ZIRC
ZFIN ID: ZDB-GENE-030131-2168
Gene Name: apolipoprotein C-II
Gene Symbol: apoc2
Sequence Ontology ID : SO:0001217

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Previous Names: fb71a04, fb98g08, wu:fb52e03, wu:fb71a04, wu:fb98g08

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(Including Attributions)
Location: Chr: 16 Mapping Details/Browsers
Nomenclature History
AUTOMATED DESCRIPTION
Predicted to have enzyme activator activity. Involved in definitive hemopoiesis and lipoprotein catabolic process. Predicted to localize to the chylomicron. Used to study familial hyperlipidemia;  ...
GENE EXPRESSION
All Expression Data: 4 figures from 2 publications
Wild-type Stages, Structures: Hatching:Long-pec (48.0h-60.0h) to Adult (90d-730d, breeding adult)
 
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sd38 Indel Exon 3 Frameshift TALEN
sd39 Indel Exon 3 Premature Stop TALEN
Targeting reagents:
DISEASE ASSOCIATED WITH apoc2 HUMAN ORTHOLOG
Disease Ontology Term OMIM Term OMIM Phenotype ID
Hyperlipoproteinemia, type Ib 207750
GENE ONTOLOGY
Ontology GO Term
Biological Process definitive hemopoiesis (more)
Cellular Component chylomicron (more)
Molecular Function enzyme activator activity (more)
GO Terms (all 7)
PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR008019 (1)
  • InterPro:IPR023121 (1)
  • Pfam:PF05355 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    ncRNA apoc2-002 (1) 534
    mRNA apoc2-202 (1) 798
    GENE PRODUCT DESCRIPTION No description available
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM apoc2 No data available
    MARKER RELATIONSHIPS
    apoc2 Contained in: [BAC] DKEY-7F3 (order this)
    apoc2 Encodes: [EST] fb52e03, fb71a04, fb98g08
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_001326448 (1)
    Genomic GenBank:BX004983 (1) 234489 bp Blast at MegaBLAST
    Polypeptide UniProtKB:A0A286YAE3 (1) 114 aa
    Sequence Clusters UniGene:104980 (1)
    Sequence Information (all 20)
    ORTHOLOGY for apoc2 ( Chr: 16 )
    CITATIONS (27)