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ZIRC
ZFIN ID: ZDB-GENE-030131-1723
Gene Name: trafficking protein particle complex 11
Gene Symbol: trappc11
Sequence Ontology ID : SO:0001217

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Previous Names: c4orf41, fb78g05, fgr (1), flj12716l, foie gras (1), foigr, wu:fb78g05, zgc:136723, zgc:63684

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(Including Attributions)
Location: Chr: 14 Mapping Details/Browsers
Nomenclature History
AUTOMATED DESCRIPTION
Involved in several processes, including Golgi organization; animal organ development; and protein N-linked glycosylation. Predicted to localize to the Golgi apparatus. Used to study fatty liver  ...
GENE EXPRESSION
All Expression Data: 3 figures from 3 publications
Directly Submitted Expression Data: 1 figure (1 image) from Thisse et al., 2004 [IMAGE:7157127]
Wild-type Stages, Structures: Zygote:1-cell (0.0h-0.75h) to Larval:Day 5 (120.0h-144.0h, 3.9mm, 6 teeth)
 
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
hi1532bTg Transgenic Insertion Intron 12 Frameshift, Premature Stop DNA
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa22424 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa30977 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • Targeting reagents:
    DISEASE ASSOCIATED WITH trappc11 HUMAN ORTHOLOG
    Disease Ontology Term OMIM Term OMIM Phenotype ID
    autosomal recessive limb-girdle muscular dystrophy type 2S Muscular dystrophy, limb-girdle, autosomal recessive 18 615356
    DISEASE ASSOCIATED WITH trappc11 VIA EXPERIMENTAL MODELS
    Human Disease Fish Conditions Citations
    fatty liver disease trappc11hi1532bTg standard conditions (2)
    trappc11hi1532bTg/hi1532bTg standard conditions DeRossi et al., 2016
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process lipid homeostasis (more)
    Cellular Component Golgi apparatus (more)
    GO Terms (all 9)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR021773 (1)
  • InterPro:IPR025876 (1)
  • Pfam:PF11817 (1)
  • Pfam:PF12742 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA trappc11-201 (1) 3843
    GENE PRODUCT DESCRIPTION
    INTERACTIONS AND PATHWAYS
    ANTIBODIES
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM trappc11 No data available
    MARKER RELATIONSHIPS
    trappc11 Contained in: [BAC] CH211-51F19 (1) (order this), CH211-235C4 (1) (order this)
    trappc11 Encodes: [EST] fb78g05, IMAGE:7157127 (1) (order this)
    [cDNA] MGC:63684 (1) (order this), MGC:136723 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_199626 (1) 3802 bp
    Genomic GenBank:BX890575 (1) 204730 bp Blast at MegaBLAST
    Polypeptide UniProtKB:Q1RLX4 (1) 1132 aa
    Sequence Clusters UniGene:65392 (1)
    Sequence Information (all 21)
    ORTHOLOGY for trappc11 ( Chr: 14 )
    CITATIONS (34)