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ZIRC
ZFIN ID: ZDB-GENE-010201-2
Gene Name: SIX homeobox 4a
Gene Symbol: six4a
Sequence Ontology ID : SO:0001217

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Previous Names: six4.2, etID19340.13 (1), fk50f02, wu:fk50f02 (1)

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(Including Attributions)
Location: Chr: 13 Mapping Details/Browsers
Nomenclature History
AUTOMATED DESCRIPTION
Predicted to have DNA-binding transcription factor activity, RNA polymerase II-specific and transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in  ...
GENE EXPRESSION
All Expression Data: text only from Kobayashi et al., 2000
Wild-type Stages, Structures: Gastrula:50%-epiboly (5.25h-5.66h) to Hatching:Pec-fin (60.0h-72.0h)
 
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
oz40 Small Deletion Unknown Unknown CRISPR
sa28142 Point Mutation Unknown Unknown ENU
Targeting reagents:
PHENOTYPE No data available
DISEASE ASSOCIATED WITH six4a HUMAN ORTHOLOG No data available
DISEASE ASSOCIATED WITH six4a VIA EXPERIMENTAL MODELS No data available
GENE ONTOLOGY
Ontology GO Term
Biological Process regulation of transcription, DNA-templated (more)
Cellular Component nucleus (more)
Molecular Function DNA binding (more)
GO Terms (all 9)
TRANSCRIPTS
Type Name Length (bp) Analysis
mRNA six4a-201 (1) 2358
aberrant processed transcript six4a-202 (1) 2046
GENE PRODUCT DESCRIPTION
INTERACTIONS AND PATHWAYS
ANTIBODIES No data available
PLASMIDS No data available
CONSTRUCTS WITH SEQUENCES FROM six4a No data available
MARKER RELATIONSHIPS
six4a Contained in: [BAC] CH211-202M24 (1) (order this)
six4a Encodes: [EST] fk50f02 (1)
[cDNA] MGC:162120 (1) (order this)
SEQUENCE INFORMATION
Type Accession # Length (bp/aa) Analysis
RNA RefSeq:NM_131718 (1) 2070 bp
Genomic GenBank:BX537123 (1) 202967 bp Blast at MegaBLAST
Polypeptide UniProtKB:Q9DEC1 (1) 595 aa
Sequence Clusters UniGene:79388 (1)
Sequence Information (all 15)
ORTHOLOGY for six4a ( Chr: 13 )
CITATIONS (30)