ZFIN ID: ZDB-GENE-010201-2
Gene Name: SIX homeobox 4a
Gene Symbol: six4a
Sequence Ontology ID : SO:0000704

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Previous Names: six4.2, etID19340.13 (1), fk50f02, wu:fk50f02 (1)

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(Including Attributions)
Location: Chr: 13 Mapping Details/Browsers
Nomenclature History
GENE EXPRESSION
All Expression Data: text only from Kobayashi et al., 2000
Wild-type Stages, Structures: Gastrula:50%-epiboly (5.25h-5.66h) to Hatching:Pec-fin (60.0h-72.0h)
 
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa28142 Point Mutation Unknown Unknown ENU
PHENOTYPE No data available
DISEASE ASSOCIATED WITH six4a HUMAN ORTHOLOG No data available
DISEASE ASSOCIATED WITH six4a VIA EXPERIMENTAL MODELS No data available
GENE ONTOLOGY
Ontology GO Term
Biological Process regulation of transcription, DNA-templated (more)
Cellular Component nucleus (more)
Molecular Function DNA binding (more)
GO Terms (all 4)
PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR001356 (1)
  • InterPro:IPR009057 (1)
  • InterPro:IPR017970 (1)
  • InterPro:IPR031701 (1)
  • PROSITE:PS00027 (1)
  • PROSITE:PS50071 (1)
  • Pfam:PF00046 (1)
  • Pfam:PF16878 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA six4a-001 (1) 2358
    aberrant processed transcript six4a-002 (1) 2046
    GENE PRODUCT DESCRIPTION
    INTERACTIONS AND PATHWAYS
    ANTIBODIESNo data available
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM six4a No data available
    MARKER RELATIONSHIPS
    six4aContained in: [BAC] CH211-202M24 (1) (order this)
    six4aEncodes: [EST] fk50f02 (1)
    [cDNA] MGC:162120 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_131718 (1) 2070bp
    Genomic GenBank:BX537123 (1) 202967bp Blast at MegaBLAST
    Polypeptide UniProtKB:Q9DEC1 (1) 595aa
    Sequence Clusters UniGene:79388 (1)
    Sequence Information (all 15)
    OTHER six4a GENE PAGES
  • Alliance (1)
  • Gene:65233 (1)
  • VEGA:OTTDARG00000020846 (1)
  • Ensembl(GRCz11):ENSDARG00000004695 (2)
  • ORTHOLOGY for six4a (Chr: 13)
    CITATIONS (26)